Category: Journal Papers

Abstract: Measuring forest biodiversity using terrestrial surveys is expensive and can only capture common species abundance in large heterogeneous landscapes. In contrast, combining airborne imagery with computer vision can generate individual tree data at the scales of hundreds of thousands of trees. To train computer vision models, ground-based species labels are combined with airborne reflectance […]

Abstract: Root system architectures are complex and challenging to characterize effectively for agronomic and ecological discovery. We propose a new method, Spatial and Texture Analysis of Root System distribution with Earth mover’s Distance (STARSEED), for comparing root system distributions that incorporates spatial information through a novel application of the Earth Mover’s Distance (EMD). We illustrate […]

Abstract: Automated individual tree crown (ITC) delineation plays an important role in forest remote sensing. Accurate ITC delineation benefits biomass estimation, allometry estimation, and species classification among other forest-related tasks, all of which are used to monitor forest health and make important decisions in forest management. In this article, we introduce neuro-symbolic DeepForest, a convolutional […]

Abstract: Heterogeneous data fusion can enhance the robustness and accuracy of an algorithm on a given task. However, due to the difference in various modalities, aligning the sensors and embedding their information into discriminative and compact representations is challenging. In this paper, we propose a Contrastive learning based MultiModal Alignment Network (CoMMANet) to align data […]

Abstract: Advances in remote sensing imagery and machine learning applications unlock the potential for developing algorithms for species classification at the level of individual tree crowns at unprecedented scales. However, most approaches to date focus on site-specific applications and a small number of taxonomic groups. Little is known about how well these approaches generalize across […]

Abstract: Synthetic aperture sonar (SAS) intensity statistics are dependent upon the sensing geometry at the time of capture. Estimating bathymetry from acoustic surveys is challenging. While several methods have been proposed to estimate seabed relief via intensity, we develop the first large-scale study that relies on deep learning models. In this work, we pose bathymetric […]

Abstract: Precision dairy farming, specifically the design of management strategies according to the animal’s needs, may soon become the norm since automated technologies that generate large amounts of data for each individual are becoming more affordable. Our objectives were to determine whether the use of behavioral changes could improve the accuracy of prediction of the […]

Congratulations to our labmates and collaborators: Ben Weinstein, Sarah Graves, Sergio Marconi, Aditya Singh, Alina Zare, Dylan Stewart, Stephanie Bohlman and Ethan P. White!  Their paper, “A benchmark dataset for individual tree crown delineation in co-registered airborne RGB, LiDAR and hyperspectral imagery from the National Ecological Observation Network”, was recently accepted to PLOS Computational Biology.  […]

Abstract: Non-invasive heart rate estimation is of great importance in daily monitoring of cardiovascular diseases. In this paper, a bidirectional long short term memory (bi-LSTM) regression network is developed for non-invasive heart rate estimation from the ballistocardiograms (BCG) signals. The proposed deep regression model provides an effective solution to the existing challenges in BCG heart […]

Abstract: Broad scale remote sensing promises to build forest inventories at unprecedented scales. A crucial step in this process is designing individual tree segmentation algorithms to associate pixels into delineated tree crowns. While dozens of tree delineation algorithms have been proposed, their performance is typically not compared based on standard data or evaluation metrics, making […]