Abstract: Purpose: Root system architectures are complex, multidimensional, and challenging to characterize effectively for agronomic and ecological discovery. Methods: We propose a new method, Spatial and Texture Analysis of Root System architecture with Earth mover’s Distance (STARSEED), for comparing root… Read More
PublicationPublication
Data Science Competition For Cross-Site Delineation And Classification Of Individual Trees From Airborne Remote Sensing Data
Abstract: Delineating and classifying individual trees in remote sensing data is challenging. Many tree crown delineation methods have difficulty in closed-canopy forests and do not leverage multiple datasets. Methods to classify individual species are often accurate for common species, but… Read More
Predictive Models To Identify Holstein Cows At Risk Of Metritis And Clinical Cure And Reproductive/Productive Failure Following Antimicrobial Treatment
Abstract: Precision dairy farming, specifically the design of management strategies according to the animal’s needs, may soon become the norm since automated technologies that generate large amounts of data for each individual are becoming more affordable. Our objectives were to… Read More
Histogram Layers For Texture Analysis
Abstract: We present a histogram layer for artificial neural networks (ANNs). An essential aspect of texture analysis is the extraction of features that describe the distribution of values in local spatial regions. The proposed histogram layer directly computes the spatial… Read More
Benchmark Dataset Accepted To Plos Computational Biology!
Congratulations to our labmates and collaborators: Ben Weinstein, Sarah Graves, Sergio Marconi, Aditya Singh, Alina Zare, Dylan Stewart, Stephanie Bohlman and Ethan P. White! Their paper, “A benchmark dataset for individual tree crown delineation in co-registered airborne RGB, LiDAR and… Read More
RandCrowns: A Quantitative Metric for Imprecisely Labeled Tree Crown Delineation
Abstract: Supervised methods for object delineation in remote sensing require labeled ground-truth data. Gathering sufficient high quality ground-truth data is difficult, especially when targets are of irregular shape or difficult to distinguish from background or neighboring objects. Tree crown delineation… Read More
Classification With Multi-Imprecise Labels
Abstract: Imprecise labels or label uncertainty are common problems in many real supervised and semi-supervised learning problems. However, most of the state-of-the-art supervised learning methods in the literature rely on accurate labels. Accurate labels are often either expensive, time-consuming, or… Read More
Non-Invasive Heart Rate Estimation From Ballistocardiograms Using Bidirectional LSTM Regression
Abstract: Non-invasive heart rate estimation is of great importance in daily monitoring of cardiovascular diseases. In this paper, a bidirectional long short term memory (bi-LSTM) regression network is developed for non-invasive heart rate estimation from the ballistocardiograms (BCG) signals. The… Read More
WALKER PRESENTS AT UF 2021 UNDERGRADUATE RESEARCH SYMPOSIUM!
Congratulations to our labmate, Sarah Walker! Sarah presented her work, titled “Divergence Regulated Encoder Network for Joint Dimensionality Reduction and Classification” at UF’s 2021 Undergraduate Research Virtual Symposium. The virtual symposium featured outstanding undergraduate researchers across all colleges at UF.… Read More
DIVERGENCE REGULATED ENCODER NETWORK FOR JOINT DIMENSIONALITY REDUCTION AND CLASSIFICATION
Abstract: In this paper, we investigate performing joint dimensionality reduction and classification using a novel histogram neural network. Motivated by a popular dimensionality reduction approach, t-Distributed Stochastic Neighbor Embedding (t-SNE), our proposed method incorporates a classification loss computed on samples… Read More