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Toward a General Framework for AI‑Enabled Prediction in Crop Improvement

July 14, 2025

Abstract: The curse of dimensionality in genomic prediction has been established and hampers genetic gain for complex traits. Artificial intelligence (AI) that fuses symbolic and sub-symbolic approaches to prediction is emerging as an approach that can deal effectively with this problem. By leveraging information across physiological and genetic networks, it is plausible to increase prediction […]

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Multi-Task Learning with Multi-Annotation Triplet Loss for Improved Object Detection

April 10, 2025

Abstract: Triplet loss traditionally relies only on class labels and does not use all available information in multi-task scenarios where multiple types of annotations are available. This paper introduces a Multi-Annotation Triplet Loss (MATL) framework that extends triplet loss by incorporating additional annotations, such as bounding box information, alongside class labels in the loss formulation. […]

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Interactive Segmentation with Prototype Learning for Few-Shot Root Annotation

April 10, 2025

Abstract: Fine-scale pixel-level annotation of minirhizotron root images is a less common and challenging task. We present an interactive segmentation framework to accelerate root annotation. We leverage the concept of few-shot segmentation so that the pre-trained model can be effectively fine-tuned and transferred to an unseen category. To provide immediate feedback for real-time interaction, we […]

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Automated potato tuber mass estimation and grading with multiangle 2D images

February 13, 2025

Abstract: Estimating potato tuber mass and size grading with computer vision can help breeders, farmers, and potato processing units reduce manual labor for potato post-harvest handling through optimized technology. The objective of the study was to estimate potato tuber mass and size grades using 2D images. Physical data of potato tubers from 23 different cultivars […]

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Quantifying Heterogeneous Ecosystem Services with Multi-Label Soft Classification

October 17, 2024

Abstract: Understanding and quantifying ecosystem services are crucial for sustainable environmental management, conservation efforts, and policy-making. The advancement of remote sensing technology and machine learning techniques has greatly facilitated this process. Yet, ground truth labels, such as biodiversity, are very difficult and expensive to measure. In addition, more easily obtainable proxy labels, such as land […]

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Individual canopy tree species maps for the National Ecological Observatory Network

October 17, 2024

Abstract: The ecology of forest ecosystems depends on the composition of trees. Capturing fine-grained information on individual trees at broad scales provides a unique perspective on forest ecosystems, forest restoration and responses to disturbance. Individual tree data at wide extents promises to increase the scale of forest analysis, biogeographic research, and ecosystem monitoring without losing […]

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Estimating Soil Mineral Nitrogen from Data-sparse Field Experiments using Crop Model-guided Deep Learning Approach

October 3, 2024

Abstract: Sandy soils are susceptible to excessive nitrogen (N) leaching under intensive crop production which is linked with the soil’s low nutrient holding capacity and high-water infiltration rate. Estimating soil mineral nitrogen (SMN) at the daily time-step is crucial in providing fertilizer recommendations balancing plant nitrogen use efficiency (NUE) and N losses to the environment. […]

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Hyperspectral signals in the soil: Plant–soil hydraulic connection and disequilibrium as mechanisms of drought tolerance and rapid recovery

August 16, 2024

Abstract: Predicting soil water status remotely is appealing due to its low cost and large-scale application. During drought, plants can disconnect from the soil, causing disequilibrium between soil and plant water potentials at pre-dawn. The impact of this disequilibrium on plant drought response and recovery is not well understood, potentially complicating soil water status predictions […]

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Elicitating Challenges and User Needs Associated with Annotation Software for Plant Phenotyping

June 10, 2024

Abstract: Artificial Intelligence (AI) has been enhancing data analysis efficiency and accuracy during plant phenotyping, which is vital for tackling global agricultural and environmental challenges. Designing a reliable AI system to assist precise plant phenotyping begins with high-quality phenotypic feature annotation, which usually involves collaboration between plant scientists and AI specialists. However, due to the […]

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Dealing with imperfect data for invasive species detection using multispectral imagery

June 10, 2024

Abstract: Detection and monitoring invasive species can provide valuable ecological information to guide management decisions. Multispectral imagery remote sensing may be an ideal tool to address this problem by providing accurate and affordable repeat imagery. However, developing training datasets for remote sensing imagery can be riddled with issues such as matching a training site to […]

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