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Publications

Refereed Journal Publications

  1. Ethan S Benevides, Prajwal P Thakre, Sabhya Rana, Michael D Sunshine, Victoria N Jensen, Karim Oweiss, David D Fuller (2025) “Chemogenetic stimulation of phrenic motor output and diaphragm activity”, eLife, Vol 13, doi: 10.7554/eLife.97846.3
  2. Shuo-Yen Chueh, Yuanxin Chen, Narayan Subramanian, Benjamin Goolsby, Phillip Navarro, Karim Oweiss (2025) “Metaplasticity and continual learning: mechanisms subserving brain computer interface proficiency”, Journal of Neural Engineering, Vol 22, doi: 10.1088/1741-2552/add37b
  3. Ido Aizenbud, Nicholas Audette, Ryszard Auksztulewicz, Krzysztof Basiński, André M Bastos, Michael Berry, Andres Canales-Johnson, Hannah Choi, Claudia Clopath, Uri Cohen, Rui Ponte Costa, Roberto De Filippo, Roman Doronin, Steven P Errington, Jeffrey P Gavornik, Colleen J Gillon, Arno Granier, Jordan P Hamm, Loreen Hertäg, Henry Kennedy, Sandeep Kumar, Alexander Ladd, Hugo Ladret, Jérôme A Lecoq, Alexander Maier, Patrick McCarthy, Jie Mei, Jorge Mejias, Fabian Mikulasch, Noga Mudrik, Farzaneh Najafi, Kevin Nejad, Hamed Nejat, Karim Oweiss, Mihai A Petrovici, Viola Priesemann, Lucas Rudelt, Sarah Ruediger, Simone Russo, Alessandro Salatiello, Walter Senn, Eli Sennesh, Sepehr Sima, Cem Uran, Anna Vasilevskaya, Julien Vezoli, Martin Vinck, Jacob A Westerberg, Katharina Wilmes, Yihan Sophy Xiong (2025) “Neural mechanisms of predictive processing: a collaborative community experiment through the OpenScope program”, arXiv preprint, arXiv:2504.09614
  4. Ethan Benevides, Prajwal Thakre, Sabhya Rana, Karim Oweiss, Vsevolod Polotsky, David Fuller (2024) “Chemogenetic phrenic motoneuron activation enables increased tidal volume”, American Physiological Society, Vol 39, doi: 10.1152/physiol.2024.39.S1.1551
  5. Phillip Navarro, Karim Oweiss (2023) “Compressive sensing of functional connectivity maps from patterned optogenetic stimulation of neuronal ensembles”, Patterns, Vol 4, doi: 10.1016/j.patter.2023.100845
  6. I-Wen Chen, Chung Yuen Chan, Phillip Navarro, Vincent de Sars, Emiliano Ronzitti, Karim Oweiss, Dimitrii Tanese, Valentina Emiliani (2023) “High-throughput in vivo synaptic connectivity mapping of neuronal micro-circuits using two-photon holographic optogenetics and compressive sensing”, BioRxiv, doi: 10.1101/2023.09.11.557026
  7. Phillip Navarro, Karim Oweiss (2022) “Compressive sensing of neuronal connectivity maps from subsampled, cell-targeted optogenetic stimulation of a network model”, BioRxiv, doi: 10.1101/2022.11.08.515672
  8. Shailaja Akella, Ali Mohebi, Jose C Principe, Karim Oweiss (2021) “Marked point process representation of oscillatory dynamics underlying working memory”, Journal of Neural Engineering, Vol 18, doi: 10.1088/1741-2552/abd577
  9. Shailaja Akella, Ali Mohebi, Kiersten Riels, Andreas Keil, Karim Oweiss, Jose C Principe (2020) “Local power estimation of neuromodulations using point process modeling”, arXiv preprint, arXiv:2011.08024
  10. Joseph S Canzano, Narayan Subramanian, Rebeca Castro, Abdurahman Siddiqi, Karim G Oweiss (2020) “In vivo two-photon imaging and parasympathetic neuromodulation of pancreatic microvascular dynamics in rats”, BioRxiv, doi: 10.1101/2020.10.26.355669
  11. Ali Mohebi, Karim G Oweiss (2020) “Lateralized role of prefrontal cortex in guiding orienting behavior”, BioRxiv,  doi: 10.1101/2020.04.12.038356
  12. Mukta Vaidya, Karthikeyan Balasubramanian, Joshua Southerland, Islam Badreldin, Ahmed Eleryan, Kelsey Shattuck, Suchin Gururangan, Marc Slutzky, Leslie Osborne, Andrew Fagg, Karim Oweiss, Nicholas G Hatsopoulos (2018) “Emergent coordination underlying learning to reach to grasp with a brain-machine interface”, Journal of neurophysiology, Vol 119, doi: 10.1152/jn.00982.2016
  13. Karthikeyan Balasubramanian, Mukta Vaidya, Joshua Southerland, Islam Badreldin, Ahmed Eleryan, Kazutaka Takahashi, Kai Qian, Marc W Slutzky, Andrew H Fagg, Karim Oweiss, Nicholas G Hatsopoulos (2017) “Changes in cortical network connectivity with long-term brain-machine interface exposure after chronic amputation”, Nature Communication, Vol 8, Issue 1, doi: 10.1038/s41467-017-01909-2
  14. P. Justin Rossi, …, K. Oweiss, et al. (2016) “The Third Annual Deep Brain Stimulation Think Tank: A Review of Emerging Issues and Technologies”, Frontiers in Neuroscience, Vol 10, doi: 10.3389/fnins.2016.00034
  15. K. Oweiss, I Badreldin, (invited review) (2015) “Neuroplasticity subserving the operation of Brain machine Interfaces,” Journal of Neurobiology of Disease
  16. S. Eldawlatly, K. Oweiss, (2014) “Temporal precision in population – but not individual neuron – dynamics reveals rapid experience-dependent plasticity in the rat barrel cortex” Frontiers in Computational Neuroscience, Vol 8, doi: 10.3389/fncom.2014.00155
  17. A. Eleryan, M. Vaidya, J. Southerland, I. Badreldin, K. Balasubramanian, A. Fagg, N. Hatsopoulos, and K. Oweiss (2014) “Tracking Single Units in Chronic Recordings in the Macaque Motor Cortex for Brain Machine Interface Applications”, Frontiers in Neural Engineering 7:23. doi:10.3389/fneng.2014.00023
  18. I. Badreldin, K. Oweiss, (2014) “Neural Decoding”, in Springer Encyclopedia of Computational Neuroscience(Dieter Jaeger & Ranu Jung, Eds), Springer Verlag
  19. M Aghagolzadeh, A Mohebi, K. Oweiss (2014), Sorting and tracking neuronal spikes via simple thresholding,” IEEE Transactions on Neural Systems and Rehabilitation Engineering, 22:4, pp 858 – 869
  20. A. Mohebi, K. Oweiss, (2013) “A fully automated rodent conditioning protocol for sensorimotor integration and cognitive control experiments,” Journal of Visualized Experiments
  21. J. Daly, J. Liu, M. Aghagolzadeh, K. Oweiss (2012), “Optimal Space Time Precoding of Artificial Sensory Feedback through Mutichannel Microstimulation in Bi-directional Brain Machine Interfaces “ J. of Neural Engineering, 9, 065004, doi:10.1088/1741-2560/9/6/065004
  22. F. Zhang, M. Aghagolzadeh, and K. Oweiss, (2012) “A Fully Implantable, Programmable and Multimodal Neuroprocessor for Wireless, Cortically Controlled Brain-Machine Interface Applications,” Journal of Signal Processing Systems, pp. 1-11, doi:10.1007/s11265-012-0670
  23. K.Y. Kwon, S. Eldawlatly, K. Oweiss (2012)“NeuroQuest: A Comprehensive Analysis Tool for Extracellular Neural Ensemble Recordings,” Journal of Neuroscience Methods 204, 189– 201
  24. S. Eldawlatly, K. Oweiss (2011) “Millisecond-Timescale Local Network Coding in the Rat Primary Somatosensory Cortex,” PLoS ONE 6(6): e21649. doi:10.1371/journal.pone.0021649
  25. J. Liu, H. Khalil, K. Oweiss (2011)“Neural Feedback for Instantaneous Spatiotemporal Modulation of Afferent Pathways in Bi-directional Brain Machine Interfaces,” IEEE Transactions on Neural Systems & Rehabilitation Engineering, 19:5, pp 521-533, doi: 10.1109/TNSRE.2011.2162003
  26. J. Liu, H. Khalil, K. Oweiss (2011)“Model-based analysis and control of a network of Basal Ganglia spiking neurons in the normal and Parkinsonian states,” Journal of Neural Engineering, 8: 045002
  27. M. Grosse-Wentrup, D. Mattia, K. Oweiss (2011), “Using Brain-Computer Interfaces to Induce Neural Plasticity and Restore Function,” Journal of Neural Engineering, 8:025004
  28. M. Aghagolzadeh, S. Eldawlatly and K. Oweiss, (2010) “Synergistic Coding by Cortical Neural Ensembles” IEEE Transactions on Information Theory, 56:2, pp. 875-899
  29. S. Eldawlatly, Y. Zhou, R. Jin and K. Oweiss, (2010) “On The Use of Dynamic Bayesian Networks in Reconstructing Functional Neuronal Networks from Spike Train Ensembles”, Journal of Neural Computation, MIT Press, 22:1, pp. 158-189
  30. M. Aghagolzadeh and K. Oweiss, (2009) “Compressed and Distributed Sensing of Neuronal Activity for Real Time Spike Train Decoding”, IEEE Transactions on Neural Systems & Rehabilitation Engineering, 17:2, pp. 416-427
  31. S. Eldawlatly, R. Jin, and K. Oweiss, (2009) “Identifying Functional Connectivity in Large Scale Neural Ensemble Recordings: A Multiscale Data Mining Approach”, Journal of Neural Computation, MIT Press, 21:2, pp. 450-477
  32. M. Kamboh, A. Mason and K. Oweiss, (2008) “Analysis of Lifting and B-Spline DWT Implementations for Implantable Neuroprosthetics,” Journal of Signal Processing Systems, 52:3, pp. 249-261
  33. Kamboh, M. Raetz, K. Oweiss, A. Mason, (2007) “Area-Power Efficient VLSI Implementation of Multichannel DWT for Data Compression in Implantable Neuroprosthetics,” IEEE Transactions Biomedical Circuits and Systems, 1:2, pp. 128-135
  34. K. Oweiss, A. Mason, Y. Suhail, A. Kamboh, K. Thomson (2007) “A Scalable Wavelet Transform VLSI Architecture for Real-Time Signal Processing in High Density Intra-cortical Implants,” IEEE Transactions on Circuits and Systems, 54:6, pp. 1266-1278
  35. K. Oweiss, and D. Anderson, (2007) “Tracking Signal Subspace Invariance for Blind Separation and Classification of Nonorthogonal Sources in Correlated Noise,” EURASIP Journal on Advances in Signal Processing, vol. 2007, Article ID 37485, 20 pages
  36. K. Oweiss, R. Jin, Y. Suhail, (2007) “Identifying neuronal assemblies with local and global connectivity with spectral clustering in scale space” Journal of Neurocomputing, 70:10-12, pp. 1728-1734
  37. K. Oweiss, (2006) “A Systems Approach for data compression and latency reduction in cortically-controlled brain machine interfaces,” IEEE Transactions on Biomedical Engineering, 53:7, pp. 1364 – 1377
  38. K. Oweiss, D.J. Anderson, (2002) “Spike Sorting: A Novel Shift and Amplitude Invariant Technique,”Journal of Neurocomputing, Vol 44-46, pp. 1133-1139
  39. K. Oweiss, D.J. Anderson, (2001) “Noise Reduction in Multichannel Neural Recording using a New Array Wavelet Denoising Algorithm,” Journal of Neurocomputing, Vol. 38-40, pp. 1687-1693

Books & Dissertations

  1. K. Oweiss, Editor (2010), Statistical Signal Processing for Neuroscience and Neurotechnology, Academic Press, Elsevier, 1st edition, ISBN-13: 978-0-12-375027-3.
  2. K. Oweiss (2002), Multiresolution Analysis of Multichannel Neural Recordings in the Context of Signal Detection, Estimation and Noise Suppression, Ph.D. Dissertation, Univ. of Michigan, Ann Arbor

Book Chapters

  1. K. Oweiss (Section Editor) (2021) “Brain Machine Interface: Overview” in Springer Encyclopedia of Computational Neuroscience (Dieter Jaeger & Ranu Jung, Eds), Springer Verlag
  2. I. Badreldin, K. Oweiss (2022) “Neural Decoding” in Springer Encyclopedia of Computational Neuroscience (Dieter Jaeger & Ranu Jung, Eds), Springer Verlag
  3. K. Oweiss, M. Aghagolzadeh (2010) “Detection and Classification of Extracellular Action Potential Recordings,” in Statistical Signal Processing for Neuroscience and Neurotechnology (Ch.2) – K. Oweiss (Editor), Academic Press, Elsevier, pp. 13-68, ISBN: 978-0-12-375027-3
  4. S. Eldawlatly, K. Oweiss, (2010) “Graphical Models of Functional and Effective Neuronal Connectivity,” in Statistical Signal Processing for Neuroscience and Neurotechnology, (Ch. 5) – K. Oweiss (Editor), Academic Press, Elsevier, pp. 119-159, ISBN: 978-0-12-375027-3
  5. K. Oweiss, D. J. Anderson (2006) “Spike Superposition Resolution In Multichannel Extracellular Neural Recordings: A Novel Approach,” in Handbook of Neural Engineering (Ch. 22) – M. Akay, (Editor), Wiley-IEEE Press, pp. 369-381, ISBN: 978-0-470-05669-1

Editorials

  1. K. Oweiss, (2011) “Optogenetics, Neural Ensemble Recordings and Graphical Models: Characterizing Plasticity in Neuronal Networks in vivo,” in Proc. of IEEE 35th Engineering & Biology Society
  2. K. Oweiss, (Invited) (2011) “Brain Machine Interfaces for personalized neurological diagnostics and therapy” Journal of CyberTherapy and Rehabilitation, 4:1, pp. 38 (ISSN: 1784-9934)
  3. K. Oweiss, (2010) Statistical Signal Processing for Neuroscience and Neurotechnology, Academic Press, Elsevier, 1st edition, pp. 1-11, ISBN: 978-0-12-375027-3
  4. T. W. Berger, Z. Chen, A. Cichocki, K. Oweiss, R. Quian Quiroga, and N. V. Thakor, (2010) “Signal Processing for Neural Spike Trains,” Journal of Computational Intelligence and Neuroscience, Volume 2010, Article ID 698751, 2 pages, doi:10.1155/2010/698751
  5. K. Oweiss, J. Principe and D. Johnson, (2009) “Statistical Signal Processing in Neuroscience”, EURASIP Journal on Advances in Signal Processing, Volume 2009, Article ID 105086, 1 page, doi:10.1155/2009/105086

Refereed Conference Papers – Published

(i) Full publication review

  1. Michael Bender, He Zheng, Adolfo Ramirez-Zamora, David Vaillancourt, Kelly Foote, and Karim Oweiss, (2026) “Thalamic Spectral and Connectivity Biomarkers for Adaptive Deep Brain Stimulation in Essential Tremor*”, IEEE/EMBS Conference on Neural Engineering (NER), San Francisco, CA
  2. Michael Bender, He Zheng, Adolfo Ramirez-Zamora, David Vaillancourt, Kelly Foote, and Karim Oweiss, (2025) “Evaluating Thalamic Biomarkers for Closed-Loop Deep Brain Stimulation in Essential Tremor*”, IEEE/EMBS Engineering in Medicine and Biology Conference (EMBC), Copenhagen, Denmark
  3. May M Mansy, Hongjae Kim, Karim G Oweiss (2019) “Spatial detection characteristics of a single photon fiber photometry system for imaging neural ensembles*”, IEEE/EMBS Conference on Neural Engineering (NER), San Francisco, CA
  4. I. Badreldin, K. Oweiss, (2014), “A Design and Implementation Framework for Unsupervised High-resolution Recursive Filters in Neuromotor Prosthesis Applications,” Asilomar Conference on Signals, Systems, and Computers, Pacific Grove, CA 
  5. I. Badreldin, J. Southerland, M. Vaidya, A. Eleryan, K. Balasubramanian, A. Fagg, N. Hatsopoulos, K. Oweiss, (2013) “Unsupervised Decoder Initialization for Brain-Machine Interfaces Using Neural State Space Dynamics,” IEEE Int. Conf. Neural Engineering, pp. 997-1000
  6. A Eleryan, M. Vaidya, I. Badreldin, J. Southerland, K. Balasubramanian, A. Fagg, N. Hatsopoulos, K. Oweiss (2013) “Tracking Chronically Recorded Single-Units in Cortically Controlled BMIs,” IEEE Int. Conf. Neural Engineering, pp. 427-430
  7. J. Daly, E. Purcell, M. Zoratti, K. Oweiss, (2013) “Control of Somatosensory Cortex Via Optogenetic Stimulation of Motor and Thalamic Pathways,” Transactions of Japanese Society for Medical and Biological Engineering
  8. J. Daly, E. Purcell, M. Zoratti, K. Oweiss, (2013) “Control of Somatosensory Cortex via Optogenetic Stimulation of Motor and Thalamic Pathways”, in Proc. IEEE Int. Conf. on EMBC
  9. K. Balasubramaniam, J. Southerland, M. Vaidya, K. Quan, A. Eleryan, A. Fagg, M. Slutzky, K. Oweiss, N. Hatsopoulos, (2013) “Operant conditioning of a multiple degree-of-freedom brain-machine interface in a primate model of amputation,” in Proc. IEEE Int. Conf. on EMBC
  10. I. Badreldin, K. Oweiss, (2012) “Performance Evaluation of Linear Brain Machine Interface Decoders in Neural State Space,” in Proc. of IEEE Cairo Int. Conf. on Biomedical Engineering, pp. 10-13
  11. J. Liu, H. Khalil, K. Oweiss, (2011) “Model-Based Spatiotemporal Analysis and Control of a Network of Spiking Basal Ganglia Neurons” in Proc. IEEE Int. Conf. on Neural Engineering, pp. 273 – 277
  12. M. Aghagolzadeh, K. Oweiss, (2011) “An Adaptive Wireless Communication Protocol for Neural Data Transmission in Freely Behaving Subjects” in Proc. IEEE Int. Conf. on Neural Engineering, pp. 404 – 407
  13. F. Zhang, M. Aghagolzadeh, K. Oweiss, (2011) “A Low-Power Implantable Neuroprocessor on Nano-FPGA for Brain Machine Interface Applications” in Proc of IEEE Int. Conf. Acoustics, Speech & Signal Processing (ICASSP), pp. 1593 – 1596
  14. K.Y. Kwon, K. Oweiss, (2011) “Wavelet footprints for detection and sorting of extracellular neural action potentials”, in Proc of IEEE Int. Conf. Acoustics, Speech & Signal Processing (ICASSP), pp. 609 – 612
  15. A. M. Kamboh, Y. Yang, K. Oweiss and A. J. Mason, (2011) “Channel Characterization for Implant to Body Surface Communication,” in Proc IEEE International Symposium on Circuits and Systems (ISCAS), pp. 913 – 916
  16. F. Zhang, M. Aghagolzadeh, K. Oweiss, (2010) “An Implantable Neuroprocessor for Multichannel Compressive Neural Recording and on-the-Fly Spike Sorting with Wireless Telemetry” in Proc. IEEE Biomedical Circuits and Systems, pp. 1-4
  17. J. Liu, K. Oweiss, H. Khalil, (2010) “Feedback Control of the Spatiotemporal Firing Patterns of Neural Microcircuits,” in Proc. of 49th IEEE Conference on Decision and Control (CDC), pp. 4679 – 4684
  18. S. Eldawlatly and K. Oweiss, (2010) “Causal Networks Provide Functional Signature of Stimulus Encoding in the Rat Barrel Cortex”, in Proc. 31st IEEE Eng. in Medicine and Biology (EMBC), pp. 5460 – 5463
  19. M. Aghagolzadeh, F. Zhang, and K. Oweiss, (2010) “An Implantable VLSI Architecture for Real Time Spike Sorting In Cortically Controlled Brain Machine Interfaces,“ in Proc. 31st IEEE Eng. in Medicine and Biology (EMBC), pp. 1569 – 1572
  20. A. Kamboh, Y. Yang, K. Oweiss, A. Mason, (2010) “Design of a Configurable Neural Data Compression System for Intra-Cortical Implants,” in Proc. of IEEE Int. Symp. on Circuits & Systems (ISCAS), pp. 3473– 3476
  21. M. Aghagolzadeh, S. Eldawlatly, and K. Oweiss (2009) “An Information Theoretic Approach to Identify the Role of Higher-order Interactions between Cortical Neurons in Stimulus Coding “ in Proc. 43rd Asilomar IEEE Int. Conference on Signals, Systems, and Computers, Pacific Grove, CA, pp. 1085-1089
  22. M. Aghagolzadeh, S. Eldawlatly, and K. Oweiss, (2009) “Coding Stimulus Information with Cooperative Neural Populations,” in Proc. of IEEE Int. Symposium on Information Theory, pp. 1594 – 1598
  23. S. Eldawlatly, Y. Zhou, R. Jin, K. Oweiss, (2009) “Inferring Functional Cortical Networks from Spike Train Ensembles using Dynamic Bayesian Networks,” in Proc of IEEE Int. Conf. Acoustics, Speech & Signal Processing (ICASSP), pp. 3489-3492
  24. M. Aghagolzadeh, K. Oweiss, (2009) “Instantaneous rate estimation of Neuronal Point processes from a Compressed representation of their non-binary spike trains “ in Proc IEEE Int. Conf. Acoustics, Speech & Signal Processing (ICASSP), pp. 1593 – 1596
  25. A. M. Kamboh, K. Oweiss, A. Mason, (2009) “Resource Constrained VLSI Architecture for Implantable Neural Data Compression Systems,” Proc. of IEEE Int. Symp. On Circuits & Systems (ISCAS), pp. 1481 – 1484
  26. F. Abu-Nimeh, F. Inanlou, M. Aghagolzadeh, A. Kamboh, A. Mason, M. Ghovanloo, and K. Oweiss, (2009) “A highly modular, wireless, Implantable Interface to the Cortex,” in Proc. IEEE Int. Conf. on Neural Engineering, 375 – 378
  27. M. Aghagolzadeh, S. Eldawlatly, K. Oweiss, (2009) “Identifying Functional Connectivity of Motor Neuronal Ensembles Improves the Performance of Population Decoders,” in Proc. IEEE Int. Conf. on Neural Engineering, pp. 534 – 537
  28. K.Y. Kwon, S. Eldawlatly and K. Oweiss, (2009) “NeuroQuest: A Comprehensive Tool for Large Scale Neural Data Processing and Analysis” in Proc. IEEE Int. Conf. on Neural Engineering, pp. 622 – 625
  29. F. Abu-Nimeh, M. Aghagolzadeh, K. Oweiss, (2008) “VLSI-friendly architecture for real-time spike sorting in Brain Machine Interface applications,” in Proc. IEEE Biomedical Circuits & Systems (BioCAS), pp. 265-268
  30. M. Aghagolzadeh, M. Shetliffe, K. Oweiss, (2008) “Impact of Compressed Sensing of Motor Cortical Activity on Spike Train Decoding in Brain Machine Interfaces,” in  Proc. 30th IEEE Eng. in Medicine and Biology (EMBC), pp. 5302-5305
  31. S. El-Dawlatly, Y. Zhou, R. Jin and K. Oweiss, (2008) “Reconstructing Functional Neuronal Circuits using Dynamic Bayesian Networks” Proc. 30th IEEE Eng. in Medicine and Biology (EMBC), pp. 5531-5534
  32. K. Oweiss, M. Shetliffe and S. Eldawaltaly (2008) “Revamping Signal Processing for Adaptive, Real Time, Bi-directional Brain Machine Interface Systems,” IEEE Int. Conf. Acoustics, Speech & Signal Processing (ICASSP), 5197-5200
  33. A. M. Kamboh, M. Raetz, A. Mason and K. Oweiss, (2007) “Area-Power Efficient Lifting-Based DWT Hardware for Implantable Neuroprosthetics,” Proc. of IEEE Int. Symposium of Circuits and Systems (ISCAS), pp. 2371-2374
  34. S. El Dawlatly and K. Oweiss, (2007) “Tracking Plasticity in Probabilistic Spike Trains Models of Synaptically-Coupled Neural Population,” in Proc. of 3rd Int. IEEE EMBS Conf. on Neural Engineering, pp. 498-501
  35. M. A. Shetliffe, K. Lorenz, B. Pietrzyk, and K. Oweiss, (2007) “Compressed and Distributed Sensing of Population Activity for Multiscale Decoding of Motor Cortical Response Properties,” in Proc. of 3rd IEEE EMBS Conf. on Neural Engineering, pp. 217-220
  36. F. Chen, S. El-Dawlatly, R. Jin and K. Oweiss, (2007) “Identifying and Tracking the number of independent clusters of functionally interdependent neurons from biophysical models of population activity,” in Proc. of 3rd IEEE EMBS Conf. on Neural Engineering, pp. 542-545
  37. A. M. Kamboh, A. Mason and K. Oweiss, (2007) “A High-Yield Area-Power Efficient DWT Hardware for Implantable Neural Interface Applications,” in Proc. of 3rd IEEE EMBS Conf. on Neural Engineering, pp. 212-216
  38. K. Oweiss, (2007) “Compressed and Distributed Sensing of Multivariate Neural Point Processes,” in Proc. IEEE Int. Conf. Acoustics, Speech & Signal Processing (ICASSP), Vol. II pp. 577-580
  39. A. Kamboh, A. Mason, K. Oweiss, (2006) “Comparison of Lifting and B-Spline DWT Implementations for Implantable Neuroprosthetics,” in IEEE Sensors, Daegu, Korea, pp 22-25
  40. S. Chakrabartty, A. Gore and K. Oweiss, (2006) “An adaptive multiple-input multiple-output analog-to-digital converter for high density neuroprosthetic electrode arrays” in Proc. 28th IEEE Eng. in Medicine and Biology (EMBC), pp. 656-659
  41. K. Oweiss, R. Jin, F. Chen, (2006) “Assessing temporal and spatial evolution of clusters of functionally interdependent neurons using graph partitioning techniques,” in Proc. 28th IEEE Eng. in Medicine and Biology (EMBC), pp.1601-1604
  42. K. Oweiss, (2006) “A MIMO channel approach for characterizing electrode-tissue interface in long-term chronic microelectrode array recordings” in Proc. 28th IEEE Eng. in Medicine and Biology (EMBC), pp.3357-3360
  43. K. Thomson and K. Oweiss, (2006) “Hardware Considerations of a Spatial Filter for Decorrelating High-density Multielectrode Neural Recordings” in Proc. 28th IEEE Eng. in Medicine and Biology (EMBC), pp. 1244-1247
  44. Y. Suhail, K. Oweiss, (2006) “Augmenting Information channels in Hearing Aids and cochlear implants under adverse conditions”, in Proc. of IEEE Conf. Acoustics, Speech & Signal Processing (ICASSP), vol. V, pp. 889-893
  45. R. Jin, Y. Suhail, K. Oweiss, (2006) “A Mixture model for spike train ensemble analysis using spectral clustering,” in Proc. IEEE Conf. Acoustics, Speech & Signal Processing (ICASSP), vol. V, pp. 885-888
  46. K. Oweiss, D. Anderson, (2006) “ Exploiting signal subspace invariance to resolve non-stationary,  non-orthogonal sensor array signals in correlated noise fields,” in Proc. IEEE Conf. Acoustics, Speech & Signal Processing (ICASSP), vol. IV, pp.885-888
  47. K. Oweiss, (2005) “Latency Reduction During Telemetry Transmission in Brain-Machine Interfaces” in Proc. 27th IEEE Eng. in Medicine and Biology (EMBC), pp. 2075-2078
  48. Y. Suhail, K. Oweiss, (2005) “Multiresolution Bayesian Detection of Multiunit Extracellular Spike Waveforms in Multichannel Neuronal Recordings,” in Proc. 27th IEEE Eng. in Medicine and Biology (EMBC), pp.141-144
  49. K. Oweiss, A. Mason, K. Thomson, J. Li, Y. Suhail, (2005) “Augmenting Real-Time DSP in Implantable High-Density Neuroprosthetic Devices,” in Proc. 3rd IEEE- Conf. on Microtechnology in Medicine & Biology, pp.108-111
  50. A. Mason, J. Li, K. Thomson, Y. Suhail, K. Oweiss, (2005) “Design Optimization of Integer Lifting DWT Circuitry for Implantable Neuroprosthetics,” in Proc. 3rd IEEE- Conf. on Microtechnology in Medicine & Biology, pp. 112-115
  51. K.E. Thomson, Y. Suhail, and K. Oweiss, (2005) ” A scalable architecture for streaming neural information from implantable multichannel neuroprosthetic devices,” in Proc. of IEEE Int. Symp. on Circuits & Systems (ISCAS), pp. 1342-1345
  52. K. Oweiss, R. Jin, Y. Suhail, (2005) “Scale-Space Processing and Clustering for Efficient Multi-Electrode Data Analysis of Large-size Neuronal Ensembles,” in Proc. 2nd Int. IEEE Conf. on Neural Engineering, pp.217-220
  53. K. Oweiss, K. Thomson, D. Anderson, (2005) “A Systems Approach for Real-Time Data Compression in Advanced Brain-Machine Interfaces,” in Proc. 2nd IEEE Conf. on Neural Engineering, pp.62-65
  54. Y. Suhail, and K. Oweiss, (2004) “A Reduced Complexity Integer Lifting Wavelet-Based Module for Real-Time Processing in Implantable Neural Interface Devices,” in  Proc. 26th IEEE Eng. in Medicine and Biology (EMBC), pp. 4552-4555
  55. K. Oweiss, (2004) “An Information Theoretic Approach for Optimizing The Analysis Of High-Density Multi-electrode Multi-unit Neuronal Recordings,” in Proc. 26th IEEE Eng. in Medicine and Biology (EMBC), pp. 4520-4523
  56. K. Oweiss, (2004) “Data Fusion in Wireless Sensor Array Networks with Signal and Noise Correlation Mismatch,”in Proc. of  IEEE Conf. Acoustics, Speech & Signal Processing (ICASSP), II, 281-284
  57. D.J. Anderson, K. Oweiss, (2003) “Capturing Signal Activity and Spatial Distribution of Neurons in a Sub-Millimeter Volume,” Proc. of 36th IEEE Asilomar Conf. on Signals, Systems and Computers, 387-391
  58. K. Oweiss, D.J. Anderson, and Marios M. Papaefthymiou (2003) “Optimizing Signal Coding in Neural Interface System-on-a-Chip Modules,” in Proc. of 25th IEEE Int. Conf. on Eng. in Medicine and Biology (EMBC), (I): 2016-2019
  59. K. Oweiss, (2003) “Source Detection in Correlated Multichannel Signal and Noise Fields,” in Proc. of IEEE Int. Conf. Acoustics, Speech & Signal Processing(ICASSP), vol. V: 257-260
  60. K. Oweiss, (2003) “Spike Superposition Resolution In Multichannel Extracellular Neural Recordings: A Novel Approach,” in Proc. of 1st Int. IEEE Conf. on Neural Engineering, (I): 130-133
  61. K. Oweiss, D.J. Anderson, (2002) “Independent Component Analysis of Multichannel Neural Recordings at the Micro-Scale,”in Proc. of the 2nd joint IEEE BMES-EMBC, (I): 2012-2013
  62. K. Oweiss, D.J. Anderson, (2002) “A Unified Framework for Advancing Array Signal Processing Technology of Multichannel Microprobe Neural Recording Devices,” in Proc of 2nd IEEE-EMBS Conference on Microtech. in Med. & Bio., (I):245-250
  63. K. Oweiss, D.J. Anderson, (2002) “A Multiresolution Generalized Maximum Likelihood Approach for the Detection of Unknown Transient Multichannel Signals in Colored Noise with Unknown Covariance,” in Proc. of IEEE Int. Conf. Acoustics, Speech & Signal Processing (ICASSP), vol. (3): 2993-2996
  64. K. Oweiss, D.J. Anderson, (2001) “MASSIT- Multiresolution Analysis of Signal Subspace Invariance Techniques: A novel technique for blind source separation,” in Proc.  of  IEEE 35th Asilomar Conf. on Signals, Systems and Computers, (I):819-823
  65. K. Oweiss, D.J. Anderson, (2001) “Neural Source Localization using Advanced Sensor Array Signal Processing Techniques,” in Proc. of the 23rd IEEE Eng. in Medicine and Biology (EMBC), (I): 707-710
  66. K. Oweiss, D.J. Anderson, (2001) “A New Technique for Blind Source Separation using Subband Subspace Analysis in Correlated Multichannel Signal Environments,” in Proc. of  IEEE Int. Conf. Acoustics, Speech & Signal Processing (ICASSP), vol. I: 2813-2816
  67. D.J. Anderson, K. Oweiss, and S. M. Bierer, (2001) “Sensor Arrays in the Micro-Environment of the Brain,” in Proc. of IEEE Int. Conf. Acoustics, Speech & Signal Processing (ICASSP), (I): 3433-3436
  68. K. Oweiss, D. J. Anderson, (2000)“A New Approach to Array Denoising,” in Proc.  IEEE 34th Asilomar Conference on Signals, Systems and Computers, (I): 1403-1407
  69. K. Oweiss, M.K. Wise, C. Lopez, J. Wiler, and D.J. Anderson, (1999) “Chronic Electrode-Brain Interface Modeled with FEM,” in Proc. of the 1st Joint IEEE-EMBC & BMES, (I):453
  70.  K. Oweiss, O. A. Alim, (1996) “Performance evaluation of time-delay fuzzy neural networks for isolated word recognition,” in IEEE Int. Symp. on Neuro-Fuzzy Systems, pp: 203 – 211
  71. K. Oweiss, O.A. Alim, and N.E. Boghdadly, (1996) “Isolated word recognition using time-delay fuzzy neural networks,” in SPIE 10th Int. conf. Aerospace/Defense sensing and control, Vol. 2761, No.2, pp.1511-1515

(ii) Refereed Journal Supplements

  1. M. Aghagolzadeh and K. Oweiss, (2011) “Prediction of Spatiotemporal Patterns of Neural Activity Using a Higher-Order Markov Representation of Instantaneous Pairwise Maximum Entropy Model,“ BMC Neuroscience,12(Suppl 1):P245, doi:10.1186/1471-2202-12-S1-P245
  2. S. Eldawlatly, K. Oweiss, (2011), “Network dynamics associated with experience-dependent plasticity in the rat somatosensory cortex,” BMC Neuroscience, 12(Suppl 1):P246, doi:10.1186/1471-2202-12-S1-P246
  3. A. Mohebi, J. Cardin, K. Oweiss, (2011) “A cell-type-specific dynamic Bayesian network model for spontaneous and optogenetically evoked activity in the primary visual cortex,” BMC Neuroscience,12(Suppl 1):O5, doi:10.1186/1471-2202-12-S1-O5
  4. S. Eldawlatly, K. Oweiss, (2010), “Causal networks in the rat barrel cortex provide a signature of stimulus encoding,” BMC Neuroscience, 11 (Suppl 1):O18, doi:10.1186/1471-2202-11-S1-O18
  5. J. Liu, K. Oweiss and H. Khalil , (2010) “Feedback control of the spatiotemporal firing pattern of a basal ganglia microcircuit model,” BMC Neuroscience, 11 (Suppl 1):O16, doi:10.1186/1471-2202-11-S1-O16
  6. S. Eldawlatly, M. Aghagolzadeh, K. Oweiss, (2009) “Decoding spike train ensembles using the cooperative interaction between task-dependent cortical neurons” BMC Neuroscience, 10 (Suppl 1):P96 doi: doi:10.1186/1471-2202-10-S1-P96
  7. S. Eldawlatly, Y. Zhou, R. Jin, K. Oweiss, (2008) “Inferring neuronal functional connectivity using dynamic Bayesian networks” BMC Neuroscience, 9 (Suppl 1):P19 doi:10.1186/1471-2202-9-S1-P19
  8. M. Aghagolzadeh, K. Oweiss, (2008) “Investigating the Effect of Cortical Discharge Variability on the Accuracy of Population Decoders,” BMC Neuroscience, 9 (Suppl 1):P2, doi:10.1186/1471-2202-9-S1-P2
  9. S. Eldawlatly, K. Oweiss, (2007) “Identifying spike-timing dependent plasticity in spike train models of synaptically-coupled neuronal ensembles,” BMC Neuroscience, 8(Suppl 2): P193, doi:10.1186/1471-2202-8-S2-P193

 (iii) Abstracts & Abstract-reviewed papers

  1. M. Vaidya, K. Balasubramanian, J. Southerland, A. Eleryan, I. Badreldin, A. Fagg, K. Oweiss, N. Hatsopoulos “Emergence of coordinated reach-to-grasp behavior in a long-term BMI experiment,” in Society for Neuroscience, Washington DC, 2014.
  2. E. K. Purcell, J. Daly, M. Mansy, A. Mohebi, M. Zoratti, K. Oweiss, (2013) “Optogenetic modulation of vibrissal somatosensory cortex via motor and thalamic inputs,” Society for Neuroscience Abstracts, 167.12/PP7
  3. F. Asgarian, M. Hashemi, W. Cartagena, S. Hao, K. Oweiss, (2013) “A wireless neural recording system for freely behaving primates,” Society for Neuroscience Abstracts, 567.06/GGG33
  4. S. El-Dawlatly, M. Aghagolzadeh, A. Mohebi, K. Oweiss, (2012) “Beyond single neuron responses: Networks capture ensemble coding properties and re-organization in cortex “. Society for Neuroscience Abstracts. pp. 413.07
  5. A. Mohebi, K. Oweiss, (2012) “Ensemble dynamics underlying sensorimotor integration in the rat medial PreFrontal Cortex (mPFC) “. Society for Neuroscience Abstracts. pp. 597.18.
  6. J. Daly, A. Eleryan and K. Oweiss (2012) “JAVA Neural Circuit Simulator (JiNCS): A flexible, open-source framework for simulating networks of spiking cells with various stimulation modalities”. Society for Neuroscience Abstracts. pp. 712.16.
  7. A. Tomaswick, K. Takahashi, M. Saleh, N. Hatsopoulos, K. Oweiss, (2012) “Graph model analysis of monkey arm kinematics during reach-to-grasp “. Society for Neuroscience Abstracts. pp. 584.17.
  8. A. Eleryan A. Dickey, N. Hatsopoulos, K. Oweiss, (2012) “Stability analysis of chronically recorded multiple single unit activity in the non-human primate “. Society for Neuroscience Abstracts. pp. 277.08.
  9. F. Asgarian Farzad , M. Kiani, M. Aghagolzadeh, A. Tomaswick, M. Ghovanloo, K. Oweiss, (2012) “A wireless implantable neural interface system for intracortical neural recording in freely behaving subjects ” Society for Neuroscience Abstracts. pp. 277.18
  10. A. Eleryan, A. Dickey, N. Hatsopoulos, K. Oweiss, (2012) “Stability Analysis of Chronically Recorded Neural Activity in the Non-Human Primate ” Neural Interfaces Conference Proceedings
  11. A. Mohebi, J. Cardin, K. Oweiss, (2012) “A cell-type-specific population analysis of optogenetically evoked response in primary visual cortex ” Computational and Systems Neuroscience Vol. 1. pp. 154.
  12. A. Mohebi, K. Oweiss, (2011) “Neural ensemble correlates of working memory in the rat medial prefrontal cortex,” Society for Neuroscience Abstracts, No 833.08
  13. A. Mohebi, J. Cardin, K. Oweiss, (2011) “A dynamic bayesian network model for up/down states of spontaneous and optogenetically evoked activity in the primary visual cortex,” No 626.21
  14. A. Aghagolzadeh, J. Cardin, K. Oweiss, (2011) “A graphical maximum entropy model for predicting stimulus-driven spatiotemporal spiking patterns of V1 cortical neurons,” No. 626.15
  15. J. Daly, J. Liu, H.Khalil, K. Oweiss, “Neural feedback for instantaneous spatiotemporal modulation of afferent pathways in bi-directional brain machine interfaces” No. 280.21, Nov 2011
  16. S. Eldawalty, K. Oweiss, (2011) “Inferring stimulus-specific network dynamics associated with experience-dependent plasticity in the rat somatosensory cortex following sensory deprivation,” No 74.22, Nov 2011
  17. S. Eldawalty, M. Aghagolzadeh & K. Oweiss, (Invited) (2011) “Probabilistic graphical models of functional and effective neuronal connectivity” Joint Statistical Meeting Society
  18. S. Eldawlatly, K. Oweiss, (2011) “Stimulus-specific neuronal circuits in the rat somatosensory cortex,”Society for Neuroscience Abstracts, No 782.19
  19. J. Liu, H.Khalil, K. Oweiss, (2010) “Feedback Control of the Spatiotemporal Firing Patterns of a Basal Ganglia Microcircuit Model,” Society for Neuroscience Abstracts, No 820.18
  20. M. Aghagolzadeh, F. Zhang, K. Oweiss, (2010) “An implantable architecture for real time unsupervised spike sorting in cortically-controlled brain machine interfaces” Society for Neuroscience Abstracts, No 85.10
  21. S. Eldawlatly, K. Oweiss, (2010) “Causal Networks in the Rat Barrel Cortex Provide a Signature of Stimulus Encoding,” 39th Neural Interfaces Conference, Long Beach, CA
  22. F. Zhang, M. Aghagolzadeh, A. Kamboh, M. Kiani, A. Mason, M. Ghovanloo, and K. Oweiss, , (2010) “A Wireless and Reconfigurable Compressive Sensing System for Neural Recording in Cortical Brain Machine Interfaces,” 39th Neural Interfaces Conference, Long Beach, CA
  23. M. Aghagolzadeh, F. Zhang, K. Oweiss, (2010) “An Implantable VLSI Architecture for Real Time Spike Sorting,” 39th Neural Interfaces Conference, Long Beach, CA
  24. J. Liu, H.Khalil, K. Oweiss, (2010) “Feedback Control of the Spatiotemporal Firing Pattern of a Basal Ganglia Microcircuit Model,” 39th Neural Interfaces Conference, Long Beach, CA
  25. K.Y. Kwon, K. Oweiss, (2010) “NeuroQuest: A Comprehensive tool for Large Scale Neural Data Analysis,” 39th Neural Interfaces Conference, Long Beach, CA
  26. S. Eldawlatly, S. Fujisawa, G. Buzsáki, K. Oweiss, (2009)  “Identifying position-specific functional networks in the rat medial prefrontal cortex,” Society for Neuroscience Abstracts, No192.9
  27. M. Aghagolzadeh , S. Eldawlatly, K. Oweiss, (2009) “The role of higher-order interactions between cortical neurons in a model of sensorimotor integration,” Society for Neuroscience Abstracts, No789.11.
  28. K. Y. Kwon, S. Eldawlatly, K. Oweiss, (2009) “NeuroQuest: A comprehensive tool for large scale neural signal processing and analysis,” Society for Neuroscience Abstracts, No 790.10
  29. F. T. Abu-Nimeh, M. Aghagolzadeh, K. Oweiss, (2009) “Real-time, on-chip spike sorting and firing rate estimation for cortically-controlled Brain Machine Interface applications,” Society for Neuroscience Abstracts, No 181.14
  30.  M. Aghagolzadeh, K. Oweiss, (2008) “Identification and tracking of functional plasticity in motor neuronal ensembles improves the performance of population decoders,” Society for Neuroscience Abstracts, No 862.19
  31. S. El-Dawlatly, K. Oweiss, (2008) “A two-stage paradigm for reconstructing functional neuronal circuits from spike train ensembles,” Society for Neuroscience Abstracts, No 862.15
  32. S. Eldawlatly, R. Jin,  K. Oweiss, (2008) “A Two-Stage Paradigm for Reconstructing Functional Neuronal Circuits” 4th Int. workshop Statistical Analysis of Neural Data (SAND), Pittsburgh
  33. M. Shetliffe, S. El-Dawlatly, K. Oweiss, (2007) “Multiscale compressed sensing of neuronal response properties for brain machine interfaces,” Society for Neuroscience Abstracts, No 770.2
  34. K. Oweiss, R. Jin, Y. Suhail, F. Chen(2006) “Identifying functionally interdependent neurons from multielectrode array recordings in local and global network contexts” in Proc. 5th Substrate-integrated microelectrode Arrays, pp.60-63, Reutlingen, Germany
  35. K. Oweiss, R. Jin, Y. Suhail, F. Chen (2006) ” Identifying neuronal assemblies with local and global connectivity with spectral clustering in scale space” in Proc. of 16th  Computational Neuroscience (CNS), Edinburgh, UK,
  36. K. Oweiss, (2006) “Compressed sensing of large-scale ensemble neural activity with resource-constrained cortical implants,” Society for Neuroscience Abstracts, No 13.11
  37. K. Oweiss, R. Jin, F. Chen, Y. Suhail, (2006) “Identification and tracking of spatial and temporal connectivity of large scale neuronal ensembles from multielectrode recorded mixtures”, NIH Neural Interface Workshop, Bethesda, MD
  38. K. Thomson, S. Chrispell, K. Oweiss, (2006) “Compressed Sensing of Large-Scale Cortical Neural Activity,” NIH Neural Interface Workshop, Bethesda, MD
  39. K. Oweiss, (2005) “A Systems Approach for Data Compression and Latency Reduction in Advanced Brain Machine Interfaces,” Society for Neuroscience Abstracts, No 707.13
  40. K. Thomson, K. Oweiss (2005) “System and Architecture Design for Implantable Neuroprosthetic Devices,” NIH Neural Interface Workshop, Bethesda, MD
  41. Y. Suhail, K. Thomson, K. Oweiss (2005) “A Systems Approach for Data Compression and Latency Reduction in Cortically Controlled Brain Machine Interfaces,” NIH Neural Interface Workshop, Bethesda, MD
  42. K. Oweiss (2005) “Augmenting Information Channels in Cochlear Implants under Adverse Conditions,” NIH Neural Interface Workshop, Bethesda, MD
  43. Y. Suhail, K. Thomson, L. Slifka, A. Thompson, R. Jin, K. Oweiss (2004) “Multiscale Processing and Analysis of High-Density Electrode Array Neural Recordings,” NIH Neural Interface Workshop, Bethesda, MD
  44. K. Oweiss, (2002) “Non-parametric detection of unknown correlated multichannel transients with sequential and block hypothesis testing in multiresolution spaces,” 2nd IEEE Sensor Array & Multichannel Signal Processing wshp.,(I):375-378
  45. K. Oweiss, D.J. Anderson, (2000) “Neural Channel Identification of Multichannel Neural Recordings using Multiresolution Analysis,” Annals of the 22nd Biomedical Engineering Society, vol. 28 (Suppl. 1): S-116